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1

[IEEE Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Stanford, CA, USA (16-19 Aug. 2004)] Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - In silico construction of the carbon fixation pathway in synechococcus sp. WH8102

Dam, P., Zhengchang Su,, Olman, V., Ying Xu,

Year:

2004

Language:

english

File:

PDF, 260 KB

english, 2004

2

Simultaneous prediction of transcription factor binding sites in a group of prokaryotic genomes

Shaoqiang Zhang, Shan Li, Phuc T Pham, Zhengchang Su

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1021 KB

english, 2010

3

[IEEE Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Stanford, CA, USA (16-19 Aug. 2004)] Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Structural analysis of FGFR1 kinase activation through molecular dynamics simulation

Peng Wang,, Zhengchang Su,, Juntao Guo,, Ying Xu,

Year:

2004

Language:

english

File:

PDF, 333 KB

english, 2004

4

Directional RNA-seq reveals highly complex condition-dependent transcriptomes inE. coliK12 through accurate full-length transcripts assembling

Shan Li, Xia Dong, Zhengchang Su

Journal:

Year:

2013

Language:

english

File:

PDF, 1.06 MB

english, 2013

5

The Evolution of Microbial Phosphonate Degradative Pathways

Jinling Huang, Zhengchang Su, Ying Xu

Journal:

Journal of Molecular Evolution

Year:

2005

Language:

english

File:

PDF, 253 KB

english, 2005

6

[IEEE Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Stanford, CA, USA (16-19 Aug. 2004)] Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Mapping of microbial pathways through constrained mapping of orthologous genes

Olman, V., Hanchuan Peng,, Zhengchang Su,, Ying Xu,

Year:

2004

Language:

english

File:

PDF, 283 KB

english, 2004

7

[IEEE Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering - Taichung, Taiwan (19-21 May 2004)] Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering - Computational inference of transcription regulation and response networks in Synechococcus sp. WH8102

Zhengchang Su,, PhuongAn Dam,, Olman, V., Ying Xu,

Year:

2004

Language:

english

File:

PDF, 217 KB

english, 2004

8

[IEEE 2011 IEEE 14th International Conference on Computational Science and Engineering (CSE) - Dalian, China (2011.08.24-2011.08.26)] 2011 14th IEEE International Conference on Computational Science and Engineering - A Simulated Annealing Algorithm for Resource Allocation and Scheduling with Precedence Constraints in the GLECLUBS/eGLECLUBS Pipelines

Zhang, Shaoqiang, Sun, Huazhi, Li, Guojun, Su, Zhengchang

Year:

2011

Language:

english

File:

PDF, 265 KB

english, 2011

9

A store-operated nonselective cation channel in lymphocytes is activated directly by Ca 2+ influx factor and diacylglycerol

Su, Zhengchang, Csutora, Peter, Hunton, Dacia, Shoemaker, Richard L., Marchase, Richard B., Blalock, J. Edwin

Journal:

American journal of physiology. Cell physiology

Year:

2001

File:

PDF, 210 KB

2001

10

Phenotypic Antimicrobial Resistance Profiles of E. coli and Enterococcus from Dairy Cattle in Different Management Units on a Central California Dairy

Li, Xunde, Aly, Sharif S, Su, Zhengchang, Pereira, Richard V, Williams, Deniece R, Rossitto, Paul, Champagne, John D, Chase, Jennifer, Nguyen, Tran, Atwill, Edward R

Journal:

Clinical Microbiology Open Access

Year:

2018

Language:

english

File:

PDF, 1.19 MB

english, 2018

11

RecBic: a fast and accurate algorithm recognizing trend-preserving biclusters

Liu, Xiangyu, Li, Di, Liu, Juntao, Su, Zhengchang, Li, Guojun, Cowen, Lenore

Journal:

Year:

2020

File:

PDF, 1014 KB

2020

12

MotifClick: prediction ofcis-regulatory binding sites via merging cliques

Shaoqiang Zhang, Shan Li, Meng Niu, Phuc T Pham, Zhengchang Su

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 467 KB

english, 2011

13

[IEEE Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Stanford, CA, USA (16-19 Aug. 2004)] Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - CUBIC: search for binding sites

Olman, V., Jizhu Lu,, Dam, P., Zhengchang Su,, Ying Xu,

Year:

2004

Language:

english

File:

PDF, 257 KB

english, 2004

14

Revealing favorable and unfavorable residues in cooperative positions in protease cleavage sites

Qi, Enfeng, Wang, Dongyu, Li, Yang, Li, Guojun, Su, Zhengchang

Journal:

Biochemical and Biophysical Research Communications

Year:

2019

Language:

english

File:

PDF, 1.27 MB

english, 2019

15

Novel Changes in Discoidal High Density Lipoprotein Morphology: A Molecular Dynamics Study

Catte, Andrea, Patterson, James C., Jones, Martin K., Gray Jerome, W., Bashtovyy, Denys, Su, Zhengchang, Gu, Feifei, Chen, Jianguo, Aliste, Marcela P., Harvey, Stephen C., Li, Ling, Weinstein, Gilbert

Journal:

Biophysical Journal

Year:

2006

Language:

english

File:

PDF, 1.45 MB

english, 2006

16

[IEEE Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Stanford, CA, USA (16-19 Aug. 2004)] Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Pathway mapping with operon information: an integer-programming method

Fenglou Mao,, Olman, V., Zhengchang Su,, Chuang, D., Ying Xu,

Year:

2004

Language:

english

File:

PDF, 240 KB

english, 2004

17

Ca2+ Modulation of Ca2+ Release-Activated Ca2+ Channels Is Responsible for the Inactivation of Its Monovalent Cation Current

Su, Zhengchang, Shoemaker, Richard L., Marchase, Richard B., Blalock, J. Edwin

Journal:

Biophysical Journal

Year:

2004

Language:

english

File:

PDF, 213 KB

english, 2004

18

SPIC: A novel similarity metric for comparing transcription factor binding site motifs based on information contents

Zhang, Shaoqiang, Zhou, Xiguo, Du, Chuanbin, Su, Zhengchang

Journal:

BMC Systems Biology

Year:

2013

Language:

english

File:

PDF, 639 KB

english, 2013

19

ProSampler: an ultra-fast and accurate motif finder in large ChIP-seq datasets for combinatory motif discovery

Li, Yang, Ni, Pengyu, Zhang, Shaoqiang, Li, Guojun, Su, Zhengchang, Berger, Bonnie

Journal:

Year:

2019

Language:

english

File:

PDF, 716 KB

english, 2019

20

Computational analysis of LexA regulons in Cyanobacteria

Shan Li, Minli Xu, Zhengchang Su

Journal:

Year:

2010

Language:

english

File:

PDF, 2.85 MB

english, 2010

21

A store-operated nonselective cation channel in lymphocytes is activated directly by Ca 2+ influx factor and diacylglycerol

Su, Zhengchang, Csutora, Peter, Hunton, Dacia, Shoemaker, Richard L., Marchase, Richard B., Blalock, J. Edwin

Journal:

American journal of physiology. Cell physiology

Year:

2001

Language:

english

File:

PDF, 210 KB

english, 2001

22

Prediction of Driver Modules via Balancing Exclusive Coverages of Mutations in Cancer Samples

Gao, Bo, Zhao, Yue, Li, Yang, Liu, Juntao, Wang, Lushan, Li, Guojun, Su, Zhengchang

Journal:

Advanced Science

Year:

2018

Language:

english

File:

PDF, 2.01 MB

english, 2018

23

Towards a map of cis-regulatory sequences in the human genome

Niu, Meng, Tabari, Ehsan, Ni, Pengyu, Su, Zhengchang

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 2.28 MB

english, 2018

24

A new type of Ca 2+ channel blocker that targets Ca 2+ sensors and prevents Ca 2+ -mediated apoptosis

MANION, MICHAEL K., SU, ZHENGCHANG, VILLAIN, MATTEO, BLALOCK, J. EDWIN

Journal:

The FASEB Journal

Year:

2000

Language:

english

File:

PDF, 333 KB

english, 2000

25

Computational prediction of cAMP receptor protein (CRP) binding sites in cyanobacterial genomes

Minli Xu, Zhengchang Su

Journal:

Year:

2009

Language:

english

File:

PDF, 498 KB

english, 2009

26

Revealing favorable and unfavorable residues in cooperative positions in protease cleavage sites

Qi, Enfeng, Wang, Dongyu, Li, Yang, Li, Guojun, Su, Zhengchang

Journal:

Biochemical and Biophysical Research Communications

Year:

2019

File:

PDF, 1.27 MB

2019

27

KSP: an integrated method for predicting catalyzing kinases of phosphorylation sites in proteins

Ma, Hongli, Li, Guojun, Su, Zhengchang

Journal:

Year:

2020

File:

PDF, 1.50 MB

2020

28

Regulation of Ca 2+ release-activated Ca 2+ channels by INAD and Ca 2+ influx factor

Su, Zhengchang, Barker, Douglas S., Csutora, Peter, Chang, Theresa, Shoemaker, Richard L., Marchase, Richard B., Blalock, J. Edwin

Journal:

AJP Cell Physiology

Year:

2003

Language:

english

File:

PDF, 332 KB

english, 2003

29

Genetic variation in exon 10 of the BPI gene is associated with Escherichia coli F18 susceptibility in Sutai piglets

Liu, Lu, Wang, Jing, Zhao, Qiaohui, Zi, Chen, Wu, Zhengchang, Su, Xianmin, Huo, Yongjiu, Zhu, Guoqiang, Wu, Shenglong, Bao, Wenbin

Journal:

Year:

2013

Language:

english

File:

PDF, 302 KB

english, 2013

30

[IEEE Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Stanford, CA, USA (16-19 Aug. 2004)] Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - A knowledge base for computational pathway reconstruction

Peng Wang,, Zhengchang Su,, Dam, P., Ying Xu,

Year:

2004

Language:

english

File:

PDF, 201 KB

english, 2004

31

A Store-Operated Nonselective Cation Channel in Human Lymphocytes

Zhengchang Su, Xiaochuan Guo, Douglas S. Barker, Richard L. Shoemaker, Richard B. Marchase, J. Edwin Blalock

Journal:

Cellular and Molecular Neurobiology

Year:

2005

Language:

english

File:

PDF, 294 KB

english, 2005

32

Calcium Influx Factor Is Synthesized by Yeast and Mammalian Cells Depleted of Organellar Calcium Stores

Peter Csutora, Zhengchang Su, Hak Yong Kim, Andrej Bugrim, Kyle W. Cunningham, Richard Nuccitelli, Joel E. Keizer, Michael R. Hanley, J. Edwin Blalock and Richard B. Marchase

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 1.70 MB

english, 1999

33

Identification of genes driving lineage divergence from single-cell gene expression data in C. elegans

Xu, Chen, Su, Zhengchang

Journal:

Developmental Biology

Year:

2014

Language:

english

File:

PDF, 1014 KB

english, 2014

34

Computational prediction of Pho regulons in cyanobacteria

Zhengchang Su, Victor Olman, Ying Xu

Journal:

Year:

2007

Language:

english

File:

PDF, 491 KB

english, 2007

35

De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets

Niu, Meng, Tabari, Ehsan S, Su, Zhengchang

Journal:

Year:

2014

Language:

english

File:

PDF, 1.82 MB

english, 2014

36

PorthoMCL: Parallel orthology prediction using MCL for the realm of massive genome availability

Ehsan Tabari,Zhengchang Su

Journal:

Big Data Analytics

Year:

2017

Language:

english

File:

PDF, 449 KB

english, 2017

37

MaxMIF: A New Method for Identifying Cancer Driver Genes through Effective Data Integration

Hou, Yingnan, Gao, Bo, Li, Guojun, Su, Zhengchang

Journal:

Advanced Science

Year:

2018

Language:

english

File:

PDF, 1.69 MB

english, 2018

38

A new type of Ca 2+ channel blocker that targets Ca 2+ sensors and prevents Ca 2+ -mediated apoptosis

MANION, MICHAEL K., SU, ZHENGCHANG, VILLAIN, MATTEO, BLALOCK, J. EDWIN

Journal:

The FASEB Journal

Year:

2000

File:

PDF, 333 KB

2000

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